Transcript: lnc-PMPCA-3:2

Basic information

LNCipedia transcript ID: lnc-PMPCA-3:2 
LNCipedia gene ID: lnc-PMPCA-3
Ensembl Gene ID: ENSG00000196366
Ensembl Transcript ID: ENST00000354376
Location (hg19): chr9:139377947-139380518
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2572 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000354376.3
Alternative gene names: ENSG00000196366.3; C9orf163


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -105.381 non-coding 
CPAT coding probability 91.72% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PMPCA-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C9orf163-3:1
4.1 lnc-C9orf163-3:1
5.0 lnc-C9orf163-3:1
5.1 lnc-GPSM1-3:2
5.2 lnc-PMPCA-3:2