Transcript: lnc-PNRC2-2:1

Basic information

LNCipedia transcript ID: lnc-PNRC2-2:1 
LNCipedia gene ID: lnc-PNRC2-2
Ensembl Gene ID: ENSG00000230703
Ensembl Transcript ID: ENST00000429191
Location (hg19): chr1:24393264-24410055
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 461 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429191.1; RP11-293P20.4-001; OTTHUMT00000008407.1; NONHSAT001582
Alternative gene names: ENSG00000230703.1; RP11-293P20.4; OTTHUMG00000003037.1; AL591178.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.9156 non-coding 
CPAT coding probability 2.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PNRC2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PNRC2-2:1
4.0 lnc-PNRC2-2:1
4.1 lnc-PNRC2-2:1
5.0 lnc-PNRC2-2:1
5.1 lnc-GRHL3-8:1
5.2 lnc-PNRC2-2:1