Transcript: lnc-POLE4-8:6

Basic information

LNCipedia transcript ID: lnc-POLE4-8:6 
HGNC Gene Symbol: lnc-POLE4-8    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1291
Ensembl Gene ID: ENSG00000204792
Ensembl Transcript ID: ENST00000435984
Location (hg19): chr2:75145275-75159921
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 565 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002936; ENST00000435984; ENST00000435984.1; AC104135.3-003; OTTHUMT00000328658.1; NONHSAT071764
Alternative gene names: XLOC_001537; linc-POLE4; ENSG00000204792; AC104135.3; ENSG00000204792.2; OTTHUMG00000152932.1; LINC01291


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.3353 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POLE4-8:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLE4-1:2
3.1 lnc-HK2-1:2
4.0 lnc-POLE4-8:6
4.1 lnc-POLE4-8:6
5.0 lnc-POLE4-8:6
5.1 lnc-POLE4-8:6
5.2 lnc-POLE4-8:6