Transcript: lnc-POLR1E-2:4

Basic information

LNCipedia transcript ID: lnc-POLR1E-2:4 
LNCipedia gene ID: lnc-POLR1E-2
Location (hg19): chr9:37485959-37506561
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1571 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000434871.1; RP11-405L18.1-001; OTTHUMT00000052467.1; NONHSAT131067
Alternative gene names: ENSG00000240336.1; RP11-405L18.1; OTTHUMG00000019922.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.3088 non-coding 
CPAT coding probability 2.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POLR1E-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POLR1E-1:1
4.0 lnc-POLR1E-2:4
4.1 lnc-POLR1E-2:4
5.0 lnc-POLR1E-2:4
5.1 lnc-POLR1E-2:4
5.2 lnc-POLR1E-2:4