Transcript: lnc-POLR2B-17:1

Basic information

LNCipedia transcript ID: lnc-POLR2B-17:1 
LNCipedia gene ID: lnc-POLR2B-17
Location (hg19): chr4:58586201-58590821
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2677 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00007538; NONHSAT096565
Alternative gene names: XLOC_003549; linc-LPHN3-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.1525 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POLR2B-17:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLR2B-4:1
3.1 lnc-POLR2B-4:2
4.0 lnc-POLR2B-4:2
4.1 lnc-POLR2B-4:2
5.0 lnc-POLR2B-4:2
5.1 lnc-CEP135-42:1
5.2 lnc-POLR2B-17:1