Transcript: lnc-POT1-2:1

Basic information

LNCipedia transcript ID: lnc-POT1-2:1 
LNCipedia gene ID: lnc-POT1-2
Ensembl Gene ID: ENSG00000219445
Ensembl Transcript ID: ENST00000420224
RefSeq ID: NR_110182
Location (hg19): chr7:124869633-124904345
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1918 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000420224; TCONS_00012927; ENST00000420224.1; RP11-3B12.3-001; OTTHUMT00000347871.1; NONHSAT123103; NR_110182; NR_110182.1
Alternative gene names: ENSG00000219445; XLOC_006594; linc-POT1-1; RP11-3B12.3; ENSG00000219445.2; OTTHUMG00000157195.1; AC019155.2; LOC101928254


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.9967 non-coding 
CPAT coding probability 13.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POT1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POT1-2:1
3.1 lnc-POT1-2:1
4.0 lnc-POT1-2:1
4.1 lnc-POT1-2:1
5.0 lnc-POT1-2:1
5.1 lnc-RNF133-21:1
5.2 lnc-POT1-2:1