Transcript: lnc-POTED-2:1

Basic information

LNCipedia transcript ID: lnc-POTED-2:1 
LNCipedia gene ID: lnc-POTED-2
Ensembl Gene ID: ENSG00000224922
Ensembl Transcript ID: ENST00000444356
Location (hg19): chr21:15142253-15144061
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 458 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028791; ENST00000444356; ENST00000444356.1; AL050303.7-001; OTTHUMT00000157663.1; NONHSAT081119
Alternative gene names: XLOC_013860; linc-RBM11-2; ENSG00000224922; AL050303.7; ENSG00000224922.1; OTTHUMG00000074200.1; AL050303.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -165.4283 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POTED-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POTED-2:1
3.1 lnc-POTED-2:1
4.0 lnc-POTED-2:1
4.1 lnc-POTED-2:1
5.0 lnc-POTED-2:1
5.1 lnc-OLIG1-154:1
5.2 lnc-POTED-2:1