Transcript: lnc-POTEM-21:3

Basic information

LNCipedia transcript ID: lnc-POTEM-21:3 
LNCipedia gene ID: lnc-POTEM-21
Location (hg19): chr14:19894369-19904572
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 725 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000551545; ENST00000551545.1; LINC00516-001; OTTHUMT00000409429.1; NONHSAT035512; NR_073459; NR_073460
Alternative gene names: ENSG00000215394; C14orf17; ENSG00000215394.4; LINC00516; OTTHUMG00000170508.1; BMS1P18


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.4269 non-coding 
CPAT coding probability 2.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POTEM-21:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR4N2-3:3
3.1 lnc-OR4N2-4:2
4.0 lnc-OR4N2-4:2
4.1 lnc-OR4N2-4:2
5.0 lnc-OR4N2-4:2
5.1 lnc-OR4K15-24:3
5.2 lnc-POTEM-21:3