Transcript: lnc-POTEM-2:29

Basic information

LNCipedia transcript ID: lnc-POTEM-2:29 
LNCipedia gene ID: lnc-POTEM-2
Ensembl Gene ID: ENSG00000257891
Ensembl Transcript ID: ENST00000551565
Location (hg19): chr14:19505871-19515575
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 573 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551565.1; CTD-2311B13.1-001; OTTHUMT00000408574.1; NONHSAT035451
Alternative gene names: ENSG00000257891.1; CTD-2311B13.1; OTTHUMG00000170338.1; AL929601.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 46.8614 non-coding 
CPAT coding probability 4.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-POTEM-2:29 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POTEG-2:1
4.0 lnc-POTEG-2:1
4.1 lnc-POTEG-2:1
5.0 lnc-POTEG-2:1
5.1 lnc-OR4K15-42:1
5.2 lnc-POTEM-2:29