Transcript: lnc-POTEM-4:13

Basic information

LNCipedia transcript ID: lnc-POTEM-4:13 
LNCipedia gene ID: lnc-POTEM-4
Location (hg19): chr14:19653908-19683250
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 412 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000548271; ENST00000548271.1; AL589743.1-014; OTTHUMT00000409109.1; NONHSAT035483
Alternative gene names: ENSG00000225210; AL589743.1; ENSG00000225210.4; OTTHUMG00000150376.4; ENSG00000225210.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.4448 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POTEM-4:13 no no no no

Available literature

  1. Qiu (2015), Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POTEG-3:13
3.1 lnc-POTEG-4:14
4.0 lnc-POTEG-4:14
4.1 lnc-POTEG-4:14
5.0 lnc-POTEG-4:14
5.1 lnc-OR4K15-31:12
5.2 lnc-POTEM-4:13