Transcript: lnc-POTEM-4:16

Basic information

LNCipedia transcript ID: lnc-POTEM-4:16 
LNCipedia gene ID: lnc-POTEM-4
Location (hg19): chr14:19680591-19683870
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 631 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000550570; ENST00000550570.1; AL589743.1-015; OTTHUMT00000409112.1; NONHSAT035489
Alternative gene names: ENSG00000225210; AL589743.1; ENSG00000225210.4; OTTHUMG00000150376.4; ENSG00000225210.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.0855 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POTEM-4:16 no no no no

Available literature

  1. Qiu (2015), Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POTEG-3:16
3.1 lnc-POTEG-4:17
4.0 lnc-POTEG-4:17
4.1 lnc-POTEG-4:17
5.0 lnc-POTEG-4:17
5.1 lnc-OR4K15-31:15
5.2 lnc-POTEM-4:16