Transcript: lnc-POTEM-4:5

Basic information

LNCipedia transcript ID: lnc-POTEM-4:5 
LNCipedia gene ID: lnc-POTEM-4
RefSeq ID: NR_122112
Location (hg19): chr14:19650037-19684290
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1401 bp
Exons: 8
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_122112; NR_122112.1
Alternative gene names: LINC01296


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.1427 non-coding 
CPAT coding probability 4.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POTEM-4:5 no no no no

Available literature

  1. Qiu (2015), Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POTEG-4:21
4.0 lnc-POTEG-4:21
4.1 lnc-POTEG-4:21
5.0 lnc-POTEG-4:21
5.1 lnc-OR4K15-31:4
5.2 lnc-POTEM-4:5