Transcript: lnc-PPARA-11:4

Basic information

LNCipedia transcript ID: lnc-PPARA-11:4 
LNCipedia gene ID: lnc-PPARA-11
Ensembl Gene ID: ENSG00000273145
Ensembl Transcript ID: ENST00000608290
Location (hg19): chr22:46409486-46411378
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1207 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549666.1; CITF22-92A6.1-001; OTTHUMT00000407766.1; NONHSAT087258; ENST00000608290.1
Alternative gene names: ENSG00000258242.1; CITF22-92A6.1; OTTHUMG00000170172.1; ENSG00000273145.1; BX537318.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.0026 non-coding 
CPAT coding probability 2.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPARA-11:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP4-695O20__B.10.1-1:1
4.0 lnc-RP4-695O20__B.10.1-1:1
4.1 lnc-RP4-695O20__B.10.1-1:1
5.0 lnc-RP4-695O20__B.10.1-1:1
5.1 lnc-PPARA-8:4
5.2 lnc-PPARA-11:4