Transcript: lnc-PPARGC1A-1:2

Basic information

LNCipedia transcript ID: lnc-PPARGC1A-1:2 
LNCipedia gene ID: lnc-PPARGC1A-1
Ensembl Gene ID: ENSG00000251292
Ensembl Transcript ID: ENST00000507666
Location (hg19): chr4:23724885-23735202
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 639 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007728; ENST00000507666; ENST00000507666.1; RP11-380P13.2-001; OTTHUMT00000360000.1
Alternative gene names: XLOC_003907; linc-GPR125-2; ENSG00000251292; RP11-380P13.2; ENSG00000251292.1; OTTHUMG00000160276.1; ERVH-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.7191 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPARGC1A-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPARGC1A-1:2
3.1 lnc-PPARGC1A-1:2
4.0 lnc-PPARGC1A-1:2
4.1 lnc-PPARGC1A-1:2
5.0 lnc-PPARGC1A-1:2
5.1 lnc-AFAP1-115:3
5.2 lnc-PPARGC1A-1:2