Transcript: lnc-PPDPFL-2:9

Basic information

LNCipedia transcript ID: lnc-PPDPFL-2:9 
LNCipedia gene ID: lnc-PPDPFL-2
Ensembl Gene ID: ENSG00000253474
Ensembl Transcript ID: ENST00000518222
Location (hg19): chr8:50081098-50141484
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 833 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518222; ENST00000518222.1; RP11-10H3.1-002; OTTHUMT00000377820.1; NONHSAT126509
Alternative gene names: ENSG00000253474; RP11-10H3.1; ENSG00000253474.1; OTTHUMG00000164208.1; AC022568.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.6169 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPDPFL-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C8orf22-2:3
3.1 lnc-C8orf22-2:3
4.0 lnc-C8orf22-2:3
4.1 lnc-C8orf22-2:3
5.0 lnc-C8orf22-2:3
5.1 lnc-SDCBP-103:9
5.2 lnc-PPDPFL-2:9