Transcript: lnc-PPDPFL-4:1

Basic information

LNCipedia transcript ID: lnc-PPDPFL-4:1 
LNCipedia gene ID: lnc-PPDPFL-4
Location (hg19): chr8:49532379-49536448
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 928 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014691; NONHSAT126489
Alternative gene names: XLOC_006790; linc-C8orf22-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.7014 non-coding 
CPAT coding probability 26.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPDPFL-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C8orf22-4:1
3.1 lnc-C8orf22-4:1
4.0 lnc-C8orf22-4:1
4.1 lnc-C8orf22-4:1
5.0 lnc-C8orf22-4:1
5.1 lnc-SDCBP-111:1
5.2 lnc-PPDPFL-4:1