Transcript: lnc-PPDPFL-4:5

Basic information

LNCipedia transcript ID: lnc-PPDPFL-4:5 
LNCipedia gene ID: lnc-PPDPFL-4
Location (hg19): chr8:49533441-49536427
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 354 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014692; NONHSAT126490
Alternative gene names: XLOC_006790; linc-C8orf22-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.7014 non-coding 
CPAT coding probability 7.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPDPFL-4:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C8orf22-4:3
3.1 lnc-C8orf22-4:3
4.0 lnc-C8orf22-4:3
4.1 lnc-C8orf22-4:3
5.0 lnc-C8orf22-4:3
5.1 lnc-SDCBP-111:5
5.2 lnc-PPDPFL-4:5