Transcript: lnc-PPDPFL-5:1

Basic information

LNCipedia transcript ID: lnc-PPDPFL-5:1 
LNCipedia gene ID: lnc-PPDPFL-5
Location (hg19): chr8:49468872-49511999
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 8150 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233858.4|MICT00000343496.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 26.1727 non-coding 
CPAT coding probability 33.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPDPFL-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C8orf22-5:3
5.0 lnc-C8orf22-5:3
5.1 lnc-SDCBP-112:1
5.2 lnc-PPDPFL-5:1