Transcript: lnc-PPFIBP2-1:1

Basic information

LNCipedia transcript ID: lnc-PPFIBP2-1:1 
LNCipedia gene ID: lnc-PPFIBP2-1
Location (hg19): chr11:7749640-7751004
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 428 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019217; NONHSAT017803
Alternative gene names: XLOC_009049; linc-EIF3F-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -154.6639 non-coding 
CPAT coding probability 17.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPFIBP2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR10AB1P-1:1
3.1 lnc-OR10AB1P-1:1
4.0 lnc-OR10AB1P-1:1
4.1 lnc-OR10AB1P-1:1
5.0 lnc-OR10AB1P-1:1
5.1 lnc-AKIP1-31:1
5.2 lnc-PPFIBP2-1:1