Transcript: lnc-PPIAL4C-4:19

Basic information

LNCipedia transcript ID: lnc-PPIAL4C-4:19 
LNCipedia gene ID: lnc-PPIAL4C-4
Location (hg19): chr1:149576491-149581061
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 526 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000453293.1; RP11-277L2.2-007; OTTHUMT00000039144.1; NONHSAT006219
Alternative gene names: ENSG00000232151.3; RP11-277L2.2; OTTHUMG00000013956.1; KIAA0493


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 52.8624 non-coding 
CPAT coding probability 21.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PPIAL4C-4:19 no no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL358813.2-2:7
4.0 LINC00869:27
4.1 LINC00869:27
5.0 LINC00869:27
5.1 lnc-FCGR1A-4:10
5.2 lnc-PPIAL4C-4:19