Transcript: lnc-PPIAL4F-4:2

Basic information

LNCipedia transcript ID: lnc-PPIAL4F-4:2 
LNCipedia gene ID: lnc-PPIAL4F-4
Location (hg19): chr1:149239868-149265510
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5057 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000325963.8; RP11-403I13.4-002; OTTHUMT00000099551.1; NONHSAT006177
Alternative gene names: ENSG00000223779.4; RP11-403I13.4; OTTHUMG00000041572.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.225 non-coding 
CPAT coding probability 99.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PPIAL4F-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPIAL4C-4:2
4.0 lnc-PPIAL4C-4:2
4.1 lnc-PPIAL4C-4:2
5.0 lnc-PPIAL4C-4:2
5.1 lnc-FCGR1A-72:2
5.2 lnc-PPIAL4F-4:2