Transcript: lnc-PPIAL4F-6:1

Basic information

LNCipedia transcript ID: lnc-PPIAL4F-6:1 
LNCipedia gene ID: lnc-PPIAL4F-6
Location (hg19): chr1:149186303-149187373
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 905 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: TCONS_00000301; ENST00000421174; NONHSAT006168
Alternative gene names: XLOC_000392; linc-PPIAL4A-5; ENSG00000236245; RP11-403I13.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.4889 non-coding 
CPAT coding probability 13.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPIAL4F-6:1 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPIAL4C-3:1
3.1 lnc-PPIAL4C-6:1
4.0 lnc-PPIAL4C-6:1
4.1 lnc-PPIAL4C-6:1
5.0 lnc-PPIAL4C-6:1
5.1 lnc-FCGR1A-76:1
5.2 lnc-PPIAL4F-6:1