Transcript: lnc-PPM1M-2:3

Basic information

LNCipedia transcript ID: lnc-PPM1M-2:3 
LNCipedia gene ID: lnc-PPM1M-2
Ensembl Gene ID: ENSG00000243224
Ensembl Transcript ID: ENST00000464958
Location (hg19): chr3:52273316-52275113
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1056 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000464958; TCONS_00005518; ENST00000464958.1; RP5-1157M23.2-001; OTTHUMT00000350204.1; NONHSAT089902
Alternative gene names: ENSG00000243224; XLOC_002652; linc-PPM1M-2; RP5-1157M23.2; ENSG00000243224.1; OTTHUMG00000158107.1; AC006252.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.7823 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPM1M-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPM1M-2:3
3.1 lnc-PPM1M-2:3
4.0 lnc-PPM1M-2:3
4.1 lnc-PPM1M-2:3
5.0 lnc-PPM1M-2:3
5.1 lnc-SPCS1-19:8
5.2 lnc-PPM1M-2:3