Transcript: lnc-PPP1R14B-1:1

Basic information

LNCipedia transcript ID: lnc-PPP1R14B-1:1 
LNCipedia gene ID: lnc-PPP1R14B-1
Ensembl Gene ID: ENSG00000257086
Ensembl Transcript ID: ENST00000545800
Location (hg19): chr11:64014411-64016966
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 853 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545800.1; RP11-783K16.13-001; OTTHUMT00000396588.2; NONHSAT021975
Alternative gene names: ENSG00000257086.1; RP11-783K16.13; OTTHUMG00000167847.2; AP001453.3; AP001453.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.2621 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP1R14B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP1R14B-1:1
4.0 lnc-PPP1R14B-1:1
4.1 lnc-PPP1R14B-1:1
5.0 lnc-PPP1R14B-1:1
5.1 lnc-LTBP3-82:2
5.2 lnc-PPP1R14B-1:1