Transcript: lnc-PPP1R1B-1:1

Basic information

LNCipedia transcript ID: lnc-PPP1R1B-1:1 
LNCipedia gene ID: lnc-PPP1R1B-1
Ensembl Gene ID: ENSG00000214546
Ensembl Transcript ID: ENST00000398554
Location (hg19): chr17:37775866-37778766
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 616 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000398554.1; AC087491.2-001; OTTHUMT00000255987.1; NONHSAT053462
Alternative gene names: ENSG00000214546.3; AC087491.2; OTTHUMG00000132690.1; AC087491.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -513.0881 non-coding 
CPAT coding probability 8.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP1R1B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC087491.2.1-1:1
4.0 lnc-AC087491.2.1-1:1
4.1 lnc-AC087491.2.1-1:1
5.0 lnc-AC087491.2.1-1:1
5.1 lnc-RPL19-13:1
5.2 lnc-PPP1R1B-1:1