Transcript: lnc-PPP1R26-1:1

Basic information

LNCipedia transcript ID: lnc-PPP1R26-1:1 
LNCipedia gene ID: lnc-PPP1R26-1
Location (hg19): chr9:138359934-138364095
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 795 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015775; ENST00000455039.1; RP11-426A6.7-001; OTTHUMT00000054989.1; NONHSAT135445
Alternative gene names: XLOC_007608; linc-KIAA0649-1; ENSG00000225361.1; RP11-426A6.7; OTTHUMG00000020905.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.3488 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP1R26-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP1R26-1:1
3.1 lnc-PPP1R26-1:1
4.0 lnc-PPP1R26-1:1
4.1 lnc-PPP1R26-1:1
5.0 lnc-PPP1R26-1:1
5.1 lnc-GPSM1-52:1
5.2 lnc-PPP1R26-1:1