Transcript: lnc-PPP1R3G-9:12

Basic information

LNCipedia transcript ID: lnc-PPP1R3G-9:12 
LNCipedia gene ID: lnc-PPP1R3G-9
Location (hg19): chr6:5035566-5044060
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1506 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011660; NONHSAT107506
Alternative gene names: XLOC_005143; linc-PPP1R3G;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.0143 non-coding 
CPAT coding probability 1.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP1R3G-9:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP1R3G-2:3
3.1 lnc-PPP1R3G-2:3
4.0 LYRM4-AS1:15
4.1 LYRM4-AS1:15
5.0 LYRM4-AS1:15
5.1 lnc-PRPF4B-160:12
5.2 lnc-PPP1R3G-9:12