Transcript: lnc-PPP2R1B-1:1

Basic information

LNCipedia transcript ID: lnc-PPP2R1B-1:1 
LNCipedia gene ID: lnc-PPP2R1B-1
Ensembl Gene ID: ENSG00000254990
Ensembl Transcript ID: ENST00000534218
Location (hg19): chr11:111639581-111649074
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 602 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534218; ENST00000534218.1; RP11-108O10.2-001; OTTHUMT00000391479.1; NONHSAT024155
Alternative gene names: ENSG00000254990; RP11-108O10.2; ENSG00000254990.1; OTTHUMG00000166794.1; ENSG00000254990.5; AP001781.2; AP001781.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.0101 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP2R1B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP2R1B-1:1
3.1 lnc-PPP2R1B-1:1
4.0 lnc-PPP2R1B-1:1
4.1 lnc-PPP2R1B-1:1
5.0 lnc-PPP2R1B-1:1
5.1 lnc-ARHGAP20-25:1
5.2 lnc-PPP2R1B-1:1