Transcript: lnc-PPP2R2D-10:1

Basic information

LNCipedia transcript ID: lnc-PPP2R2D-10:1 
LNCipedia gene ID: lnc-PPP2R2D-10
Ensembl Gene ID: ENSG00000273521
Ensembl Transcript ID: ENST00000617191
Location (hg19): chr10:133793744-133794841
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1098 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000617191.1
Alternative gene names: ENSG00000273521.1; RP11-45A17.4; AL162274.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -46.763 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP2R2D-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PPP2R2D-10:1
4.1 lnc-PPP2R2D-10:1
5.0 lnc-PPP2R2D-10:1
5.1 lnc-MGMT-30:1
5.2 lnc-PPP2R2D-10:1