Transcript: lnc-PPP2R2D-8:1

Basic information

LNCipedia transcript ID: lnc-PPP2R2D-8:1 
LNCipedia gene ID: lnc-PPP2R2D-8
Location (hg19): chr10:133002478-133003753
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 881 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_408_chr10:133002477-133003753_thyroid
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.26 non-coding 
CPAT coding probability 8.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP2R2D-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP2R2D-8:1
4.0 lnc-PPP2R2D-8:1
4.1 lnc-PPP2R2D-8:1
5.0 lnc-PPP2R2D-8:1
5.1 lnc-MGMT-23:1
5.2 lnc-PPP2R2D-8:1