Transcript: lnc-PPP4R1-21:1

Basic information

LNCipedia transcript ID: lnc-PPP4R1-21:1 
LNCipedia gene ID: lnc-PPP4R1-21
Location (hg19): chr18:8703888-8705089
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1202 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000036867.1|ENCT00000195511.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.9224 non-coding 
CPAT coding probability 6.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP4R1-21:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PPP4R1-21:1
5.0 lnc-PPP4R1-21:1
5.1 lnc-SMAD2-315:1
5.2 lnc-PPP4R1-21:1