Transcript: lnc-PPP4R1-9:1

Basic information

LNCipedia transcript ID: lnc-PPP4R1-9:1 
LNCipedia gene ID: lnc-PPP4R1-9
Location (hg19): chr18:8559865-8563192
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 339 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026399; NONHSAT057178
Alternative gene names: XLOC_012750; linc-LAMA1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.2096 non-coding 
CPAT coding probability 7.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP4R1-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP4R1-5:1
3.1 lnc-PPP4R1-9:1
4.0 lnc-PPP4R1-9:1
4.1 lnc-PPP4R1-9:1
5.0 lnc-PPP4R1-9:1
5.1 lnc-SMAD2-318:1
5.2 lnc-PPP4R1-9:1