Transcript: lnc-PQLC1-13:2

Basic information

LNCipedia transcript ID: lnc-PQLC1-13:2 
LNCipedia gene ID: lnc-PQLC1-13
Ensembl Gene ID: ENSG00000275186
Ensembl Transcript ID: ENST00000621571
Location (hg19): chr18:77230120-77230940
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 568 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621571.1
Alternative gene names: ENSG00000275186.1; RP11-196B3.3; AC018445.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -55.8649 non-coding 
CPAT coding probability 7.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PQLC1-13:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC068473.1-13:1
4.1 lnc-AC068473.1-13:1
5.0 lnc-AC068473.1-13:1
5.1 lnc-PQLC1-13:1
5.2 lnc-PQLC1-13:2