Transcript: lnc-PRAMEF26-2:2

Basic information

LNCipedia transcript ID: lnc-PRAMEF26-2:2 
LNCipedia gene ID: lnc-PRAMEF26-2
Ensembl Gene ID: ENSG00000233336
Ensembl Transcript ID: ENST00000437631
Location (hg19): chr1:13214432-13214911
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 384 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437631.1
Alternative gene names: ENSG00000233336.1; RP13-221M14.2; AC245056.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -78.4763 non-coding 
CPAT coding probability 6.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRAMEF26-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-WI2-2994D6.2.1-2:1
4.1 lnc-WI2-2994D6.2.1-2:1
5.0 lnc-WI2-2994D6.2.1-2:1
5.1 lnc-PRAMEF26-2:1
5.2 lnc-PRAMEF26-2:2