Transcript: lnc-PRC1-5:2

Basic information

LNCipedia transcript ID: lnc-PRC1-5:2 
LNCipedia gene ID: lnc-PRC1-5
Location (hg19): chr15:91475832-91478284
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 224 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000438890.1; AC068831.3-002; OTTHUMT00000280401.1; NONHSAT048450
Alternative gene names: ENSG00000224441.1; AC068831.3; OTTHUMG00000141259.1; AC068831.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -316.9375 non-coding 
CPAT coding probability 6.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRC1-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDDC3-1:2
4.0 lnc-HDDC3-1:2
4.1 lnc-HDDC3-1:2
5.0 lnc-HDDC3-1:2
5.1 lnc-CIB1-14:2
5.2 lnc-PRC1-5:2