Transcript: lnc-PRDM2-8:1

Basic information

LNCipedia transcript ID: lnc-PRDM2-8:1 
LNCipedia gene ID: lnc-PRDM2-8
Location (hg19): chr1:14531973-14532868
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 651 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT000992; FPKM1_group_147_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.3577 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM2-8:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf196-1:2
4.0 lnc-C1orf196-1:2
4.1 lnc-C1orf196-1:2
5.0 lnc-C1orf196-1:2
5.1 lnc-PRDM2-4:1
5.2 lnc-PRDM2-8:1