Transcript: lnc-PRDM4-2:2

Basic information

LNCipedia transcript ID: lnc-PRDM4-2:2 
LNCipedia gene ID: lnc-PRDM4-2
Location (hg19): chr12:108230157-108231228
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 473 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020910; NONHSAT030517
Alternative gene names: XLOC_010190; linc-PRDM4-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.1659 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM4-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM4-1:2
3.1 lnc-PRDM4-2:2
4.0 lnc-PRDM4-2:2
4.1 lnc-PRDM4-2:2
5.0 lnc-PRDM4-2:2
5.1 lnc-APPL2-29:2
5.2 lnc-PRDM4-2:2