Transcript: lnc-PRDM9-10:2

Basic information

LNCipedia transcript ID: lnc-PRDM9-10:2 
LNCipedia gene ID: lnc-PRDM9-10
Location (hg19): chr5:22142461-22152370
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 679 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT100728
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.275 non-coding 
CPAT coding probability 10.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM9-10:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRDM9-10:2
4.0 lnc-PRDM9-10:2
4.1 lnc-PRDM9-10:2
5.0 lnc-PRDM9-10:2
5.1 lnc-CARD6-168:2
5.2 lnc-PRDM9-10:2