Transcript: lnc-PRDM9-162:2

Basic information

LNCipedia transcript ID: lnc-PRDM9-162:2 
LNCipedia gene ID: lnc-PRDM9-162
RefSeq ID: NR_131245
Location (hg19): chr5:23951457-24178374
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1986 bp
Exons: 5
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_131245.1
Alternative gene names: C5orf17


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 91.7491 coding 
CPAT coding probability 56.52% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PRDM9-162:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-CARD6-162:2
5.1 lnc-CARD6-162:2
5.2 lnc-PRDM9-162:2