Transcript: lnc-PRDM9-162:3

Basic information

LNCipedia transcript ID: lnc-PRDM9-162:3 
LNCipedia gene ID: lnc-PRDM9-162
Ensembl Gene ID: ENSG00000248874
Ensembl Transcript ID: ENST00000507936
Location (hg19): chr5:23951673-23980095
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507936.1
Alternative gene names: ENSG00000248874.5; C5orf17


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 107.8963 coding 
CPAT coding probability 71.13% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PRDM9-162:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C5orf17-8:19
4.1 lnc-C5orf17-8:19
5.0 lnc-C5orf17-8:19
5.1 lnc-CARD6-162:3
5.2 lnc-PRDM9-162:3