Transcript: lnc-PRDM9-19:1

Basic information

LNCipedia transcript ID: lnc-PRDM9-19:1 
LNCipedia gene ID: lnc-PRDM9-19
Ensembl Gene ID: ENSG00000260761
Ensembl Transcript ID: ENST00000562632
Location (hg19): chr5:25319943-25321455
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1513 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562632.1; RP11-184E9.2-001; OTTHUMT00000366517.2; NONHSAT100773
Alternative gene names: ENSG00000260761.1; RP11-184E9.2; OTTHUMG00000161957.2; AC106754.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.2323 non-coding 
CPAT coding probability 0.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM9-19:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf17-7:1
4.0 lnc-C5orf17-7:1
4.1 lnc-C5orf17-7:1
5.0 lnc-C5orf17-7:1
5.1 lnc-CARD6-155:1
5.2 lnc-PRDM9-19:1