Transcript: lnc-PRDM9-20:1

Basic information

LNCipedia transcript ID: lnc-PRDM9-20:1 
LNCipedia gene ID: lnc-PRDM9-20
Location (hg19): chr5:25226115-25333669
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1243 bp
Exons: 5
Sources: Nielsen et al.,2014
Alternative transcript names: l_2892_chr5:25226114-25296590_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.9703 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM9-20:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf17-10:1
4.0 lnc-C5orf17-10:1
4.1 lnc-C5orf17-10:1
5.0 lnc-C5orf17-10:1
5.1 lnc-CARD6-156:1
5.2 lnc-PRDM9-20:1