Transcript: lnc-PRDM9-3:2

Basic information

LNCipedia transcript ID: lnc-PRDM9-3:2 
LNCipedia gene ID: lnc-PRDM9-3
Location (hg19): chr5:24880280-24882020
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 407 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009907; NONHSAT100762
Alternative gene names: XLOC_004319; linc-CDH6-9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.2169 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM9-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf17-2:1
3.1 lnc-C5orf17-3:1
4.0 lnc-C5orf17-3:1
4.1 lnc-C5orf17-3:1
5.0 lnc-C5orf17-3:1
5.1 lnc-CARD6-158:1
5.2 lnc-PRDM9-3:2