Transcript: lnc-PRDM9-8:2

Basic information

LNCipedia transcript ID: lnc-PRDM9-8:2 
LNCipedia gene ID: lnc-PRDM9-8
Location (hg19): chr5:23980696-23981047
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 352 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT100748
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.7793 non-coding 
CPAT coding probability 12.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM9-8:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRDM9-8:1
4.0 lnc-C5orf17-8:20
4.1 lnc-C5orf17-8:20
5.0 lnc-C5orf17-8:20
5.1 lnc-CARD6-161:1
5.2 lnc-PRDM9-8:2