Transcript: lnc-PRDX3-1:1

Basic information

LNCipedia transcript ID: lnc-PRDX3-1:1 
LNCipedia gene ID: lnc-PRDX3-1
Location (hg19): chr10:121094144-121095542
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 471 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000457948.1; RP11-79M19.2-001; OTTHUMT00000050650.1
Alternative gene names: ENSG00000236426.1; RP11-79M19.2; OTTHUMG00000019148.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -308.242 non-coding 
CPAT coding probability 6.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDX3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRDX3-1:1
4.0 lnc-PRDX3-1:1
4.1 lnc-PRDX3-1:1
5.0 lnc-PRDX3-1:1
5.1 lnc-NSMCE4A-51:3
5.2 lnc-PRDX3-1:1