Transcript: lnc-PRELID3B-2:1

Basic information

LNCipedia transcript ID: lnc-PRELID3B-2:1 
LNCipedia gene ID: lnc-PRELID3B-2
Ensembl Gene ID: ENSG00000230352
Ensembl Transcript ID: ENST00000440889
Location (hg19): chr20:57935982-57939828
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 620 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028079; ENST00000440889; ENST00000440889.1; RP4-614C15.3-001; OTTHUMT00000268116.1; NONHSAT080618
Alternative gene names: XLOC_013823; linc-SLMO2-2; ENSG00000230352; RP4-614C15.3; ENSG00000230352.1; OTTHUMG00000137385.1; AL035250.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.7597 non-coding 
CPAT coding probability 8.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRELID3B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLMO2-2:1
3.1 lnc-SLMO2-2:1
4.0 lnc-SLMO2-2:1
4.1 lnc-SLMO2-2:1
5.0 lnc-SLMO2-2:1
5.1 lnc-SPATA2-122:1
5.2 lnc-PRELID3B-2:1