Transcript: lnc-PREPL-3:3

Basic information

LNCipedia transcript ID: lnc-PREPL-3:3 
LNCipedia gene ID: lnc-PREPL-3
Ensembl Gene ID: ENSG00000273106
Ensembl Transcript ID: ENST00000609837
Location (hg19): chr2:44394764-44395998
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1235 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609837.1
Alternative gene names: ENSG00000273106.1; RP11-559M23.1; AC019129.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.6 non-coding 
CPAT coding probability 2.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PREPL-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PREPL-2:1
4.0 lnc-PREPL-2:1
4.1 lnc-PREPL-3:3
5.0 lnc-PREPL-3:3
5.1 lnc-ATP6V1E2-27:1
5.2 lnc-PREPL-3:3