Transcript: lnc-PREX1-6:1

Basic information

LNCipedia transcript ID: lnc-PREX1-6:1 
LNCipedia gene ID: lnc-PREX1-6
Location (hg19): chr20:46987427-46988560
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 427 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028424; NONHSAT080137
Alternative gene names: XLOC_013775; linc-SULF2-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.7371 non-coding 
CPAT coding probability 12.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PREX1-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PREX1-6:1
3.1 lnc-PREX1-6:1
4.0 lnc-PREX1-6:1
4.1 lnc-PREX1-6:1
5.0 lnc-PREX1-6:1
5.1 lnc-SULF2-20:1
5.2 lnc-PREX1-6:1