Transcript: lnc-PREX1-6:2

Basic information

LNCipedia transcript ID: lnc-PREX1-6:2 
LNCipedia gene ID: lnc-PREX1-6
Location (hg19): chr20:46987429-46988440
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 551 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00028058; ENST00000451572; ENST00000451572.1; RP1-66N13.2-001; OTTHUMT00000079616.1; NONHSAT080138
Alternative gene names: XLOC_013775; linc-SULF2-8; ENSG00000230236; RP1-66N13.2; ENSG00000230236.1; OTTHUMG00000032681.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.7371 non-coding 
CPAT coding probability 11.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PREX1-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PREX1-6:2
3.1 lnc-PREX1-6:2
4.0 lnc-PREX1-6:2
4.1 lnc-PREX1-6:2
5.0 lnc-PREX1-6:2
5.1 lnc-SULF2-20:2
5.2 lnc-PREX1-6:2