Transcript: lnc-PRKCH-1:1

Basic information

LNCipedia transcript ID: lnc-PRKCH-1:1 
LNCipedia gene ID: lnc-PRKCH-1
Location (hg19): chr14:61653794-61670653
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 6662 bp
Exons: 6
Sources: Nielsen et al.,2014
Alternative transcript names: l_999_chr14:61653793-61670653_brain
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.8515 non-coding 
CPAT coding probability 3.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKCH-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRKCH-1:1
4.0 lnc-PRKCH-1:1
4.1 lnc-PRKCH-1:1
5.0 lnc-PRKCH-1:1
5.1 lnc-ACTR10-53:1
5.2 lnc-PRKCH-1:1